@Vinny @Moderator Thank you for the response.
The reason why we suspected a power issue is that the Flight Core PX4 logs have gaps in data. My apologies as I should have included that info initially. Here is an example from manual setpoint data.
6b5c0659-91f0-424d-93ae-6f5fb178bcb8-image.png
Here is a scatterplot for throttle manual setpoint data to show that those straight lines on the line graph are indeed gaps in data and not inhumanly smooth setpoint changes.
bdc82181-0b10-4f33-a424-a91274f00989-image.png
These gaps are consistent across all the data in the log, which led us to hypothesize that power was lost during these instances. We are using a custom controller that employs SBUS joystick protocol through QGC. Let me know if this info sparks any other ideas or is reminiscent of another issue.