@SMRazaRizvi , As I mentioned in my previous post, the plot shows that for some reason there was a command for Motor 2 to go to zero (which would convert to the minimum PWM value of 1000). Do you remember if you have performed some aggressive maneuver at the end, which would trigger this?
Also, can you please perform acuator test using GCS and figure out at which actuator output value, your motors actually spin up?